Specifications

Specifications

FeatureDescription
Number of Markers>715,000
Number of Samples per OmniExpress-24 BeadChip24
Number of Samples per OmniExpress-24+ BeadChip24
DNA Requirement200 ng
AssayInfinium® HTS
Instrument SupportHiScan or iScan
Sample Throughput*> 2,880 / week
Scan Time / Sample2.5 minutes

% Variation Captured
(r2 > 0.8)

1 kGP
MAF >5%

1 kGP
MAF >1%

CEU

0.730.58

CHB + JPT

0.740.62

YRI

0.400.25
Data PerformanceValue/Product Specification
Call Frequency99.84% / > 99% avg.
Reproducibility99.99% / > 99.9%
Log R Deviation0.15 / < 0.30§
SpacingMean / Median / 90th%
Spacing (kb)4.0 / 2.1 / 9.3
Marker CategoriesNumber of Markers
Number of SNPs with 10kb of RefSeq genes392,197
Nonsynonymous SNPs
(NCBI annotated)
15,062
MHC / ADME7,459 / 16,649
Sex Chromosome
(X / Y / PAR Loci)
18,055 / 1,409 / 471

* Estimate assumes one iScan system, one AutoLoader2, one Tecan Robot, a five-day work week, and 2 full-time employees.

Compared against the June 2011 1kGP data release.

Values are derived from reference samples.

§ Value expected for typical projects, excluding tumor samples or any samples prepared not following standard Illumina protocols.