Specifications

Specifications

Feature Description
Total Number of Markers 2,608,742
Exonic Markers 354,158
Number of Samples per BeadChip 8
DNA Input Requirement 200 ng
Assay Infinium LCG
Instrument Support iScan or HiScan
Sample Throughput* ~1,067 samples/week
Scan Time per Sample

11.3 min (iScan)

6.5 min (HiScan)

% Variation Captured
(r2 > 0.8)

1 kGP**
MAF >5%

1 kGP**
MAF >1%

CEU

0.83 0.73

CHB + JPT

0.83 0.73

YRI

0.65 0.51
Data Performance Value/Product Specification
Call Frequency 99.83% / > 99% avg.
Reproducibility 99.99% / > 99.9%
Log R Deviation 0.10 / < 0.30
Spacing Mean Median 90th%
Spacing (kb) 1.12 0.56 2.63

* Estimate assumes 1 iScan system, 1 AutoLoader 2.x, 1 Tecan robot, and a 5-day work week.

** Compared against the June 2011 1000 Genomes Project (1kgp) data release.

 Values are derived from genotyping 284 HapMap reference samples.

 Value expected for typical projects using standard Illumina protocols. Tumor samples and samples prepared by methods other than standard Illumina protocols are excluded.