MiSeq Compatible Products

Sample Information

Use Illumina Experiment Manager to record information about your samples, such as sample ID and which index adapters are used for pooling.

Library Preparation

See MiSeq Applications and Methods for possible applications.

After preparing libraries, denature and dilute libraries to a loading concentration of 6–20 pM. For instructions, see the MiSeq System Denature and Dilute Libraries Guide.

Run Components

Use the compatible version of the MiSeq Control Software (MCS) for your flow cell. For more information on flow cells, see MiSeq Reagent Kit.

Flow Cell

Cap Color

Compatible MCS Version

Standard Flow Cell in MiSeq Reagent Kit v3 (19 tiles)

Clear

MCS v2.3, or later

PGS Flow Cell in MiSeq Reagent Kit v3 (19 tiles)

Clear

MCS v2.4, or later

Standard Flow Cell in MiSeq Reagent Kit v2 (14 tiles)

Clear

MCS v2.0, or later

Micro Flow Cell in MiSeq Reagent Micro Kit v2 (4 tiles)

Green

MCS v2.1, or later

Nano Flow Cell in MiSeq Reagent Nano Kit v2 (2 tiles)

Yellow

MCS v2.0, or later

Analysis Options