GenomeStudio Training

  • Training Videos

    DATE/LENGTH


  • CNV Analysis Basics
    This course introduces the basics of CNV analysis with the Infinium assay. Topics include Copy Number Variation (CNV), Loss of Heterozygosity (LOH), B Allele Frequency (BAF), and Log R Ratio (LRR).

    20 min


  • GenomeStudio: Performing CNV Analysis Using cnvPartition
    After completing this course you will understand the basis for cnvPartition's calculation of copy number, be able to install the Illumina cnvPartition plug-in software, carry out a CNV analysis on a GenomeStudio genotyping project using cnvPartition, and visualize and report the results of CNV analysis using Illumina GenomeViewer.

    15 min


  • Beeline 2.0 and Infinium Genotyping Data Analysis Workflows

    Recorded Webinar (June 2017) | Looking for ways to optimize the efficiency of your Infinium genotyping data analysis workflow? Come learn how Beeline 2.0 Software can help! This webinar is targeted to new and intermediate users with a basic knowledge of working with genotyping data in GenomeStudio. We will go over the following topics: Generation of GTC files from Infinium genotyping data, Beeline 2.0 features: QC, filtering, reporting, and GenomeStudio integration, and examples of Infinium genotyping data analysis workflows.


  • BlueFuse Multi: Introduction to the Cytochip Module

    Recorded Webinar (February 2016) | This webinar will introduce customers to BlueFuse Multi and the functionality of the software for the cytochip module. We will describe how to install and set-up the software for use with compatible Illumina products.


  • Evaluating Infinium Genotyping Assay Controls

    Recorded Webinar (October 2015) | This webinar is targeted to users of standard Infinium products and custom iSelect BeadChips interested in the basics of assessing data quality in GenomeStudio. We will demonstrate how to use the GenomeStudio Controls Dashboard for effective assay QC and troubleshooting of Infinium genotyping data. The webinar will cover the different types of controls used in the Infinium genotyping assay, where in the assay workflow they come into play, and what the expected outcome is for each of the controls. These concepts will be applied in a live troubleshooting demo in GenomeStudio. A question and answer session will immediately follow the presentation.


  • GenomeStudio 2.0: Polyploid Genotyping Module - Introduction

    Recorded Webinar (November 2016) | The GenomeStudio 2.0 Polyploid Genotyping Module provides algorithms to cluster and output genotypes for non-diploid species, such as potato. This webinar is intended for intermediate and advanced GenomeStudio users with knowledge of working with non-diploid genotyping data and will cover the following topics: Loading a Polyploid Genotyping project in GenomeStudio 2.0; the two supported types of polyploidy: autopolyploidy and allopolyploidy; the two algorithms for polyploid clustering: PolyGentrain and DBSCAN; general and algorithm-specific clustering options, and manual manipulation of clusters, and exporting final reports and polyploid genotyping cluster files (.egtp).


  • GenomeStudio Genotyping: Creating Custom Cluster Files for Infinium Arrays

    Recorded Webinar (October 2016) | Clustering using your own samples is necessary for custom array content and will produce the most accurate data for any project, especially for atypical samples such as FFPE samples. This webinar is targeted at new and intermediate users with a basic knowledge of working with Genotyping Data in GenomeStudio and will go over the following topics: Cluster file basics, when to use a custom cluster file, how to create a custom cluster file, and how to filter and manually edit to optimize the cluster file.


  • GenomeStudio: Advanced Analysis Tools

    Recorded Webinar (July 2019) | This webinar is intended for all levels of GenomeStudio users. We will demonstrate the use of some available tools and techniques in the GenomeStudio Genotyping, Methylation, and Expression modules, including: heritability and reproducibility analysis; concordance tool -heat map, dendrogram, histogram/frequency plots; and image viewing- scatter plot tools.


  • GenomeStudio: Introduction to Infinium Genotyping

    Recorded Webinar (June 2018) | This webinar is targeted for new users and introduces the basics of getting started with Infinium Genotyping analysis in GenomeStudio. The following topics are covered: Introduction to Infinium Genotyping Analysis concepts, downloading and Installing GenomeStudio, and GenomeStudio Analysis Workflows.


  • GenomeStudio: Methylation Module - Normalization and Differential Analysis of HumanMethylation450 Data

    Recorded Webinar (February 2015) | This webinar reviews the processes in GenomeStudio for data normalization and differential methylation analysis. We analyze the algorithms used in the controls normalization, options for differential methylation, options for third party software, and include a live GenomeStudio demonstration.  As preparation for this course, we encourage you to download and view the following pre-recorded webinar: “Infinium Methylation: Introduction to Analysis” prior to attending.  


  • Infinium Assay: CNV Analysis Using GenomeStudio or BlueFuse Multi Software

    Upcoming Webinar | llumina Technical Support invites you to join us for a presentation on Infinium Copy Number Variations (CNV) analysis using GenomeStudio and BlueFuse Multi software. CNVs are genomic alterations that result in an abnormal number of copies of one or more genes and can contribute to diseases. This webinar is targeted at beginning users of the Infinium assay who are planning to analyze the data for CNVs. The webinar will cover the following topics: how Infinium genotyping data is converted to copy number analysis, a demonstration showing how GenomeStudio and the plugin software cnvPartition generate CNV detection analysis, a demonstration of BlueFuse Multi for CNV detection, and the effects of mosaicism on the data.

    Sep 24, 2019 PST