Local Run Manager Software Support

This page supports on- and off-instrument versions of Local Run Manager.


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Custom Protocol Selector

Generate end-to-end documentation tailored to your experiment.

Local Run Manager Module Selector

Find the analysis modules compatible with your instrument and Local Run Manager configuration.

Library Prep and Array Kit Selector

Determine the best kit for your project type, starting material, and method or application.

Sequencing Coverage Calculator

Determine reagents and sequencing runs for your desired coverage.


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Maximize the effectiveness of your Illumina system, train new employees, or learn the latest techniques and best practices. We offer support webinars, online courses, expert video tips, and instructor-led trainings.

Featured Training
Local Run Manager v3

How to get started using the Local Run Manager software to set up your sequencing runs and view analysis results.

BaseSpace Sequence Hub: FASTQ Processing Tools for Data Analysis

Details the basic bioinformatics tools used for processing FASTQs.

Local Run Manager 2.0 (RUO): Introduction - On and Off-Instrument

Overview of software features, available versions, run setup steps, and comparison to other Illumina analysis software.